EJ – Tim Elite Pro Academy (EPA) Persebaya mengawali putaran kedua dengan bertandang ke kandang PSM Makasar di Stadion BJ Habibie Kota Parepare pada hari Sabtu dan Minggu 4-5 Nopember 2023.
Pada hari petama Sabtu (4/11) atau laga ke-11 tiga hasil berbeda didapatkan oleh tim Persebaya muda ini. Persebaya U-16 asuhan Mat Halil berhasil mencuri tiga poin. PSM Makasar harus mengakui keunggulan Kafka dkk dengan skor 1 – 2.
Sementara pada laga kedua Persebaya U-18 harus mengakui keunggulan tuan rumah dengan skor tipis 1 – 0. Dan sore harinya Persebaya U-20 bermain imbang 1 – 1.
Selanjutnya pada laga ke-12 hari Minggu (5/11) anak asuh Mat Halil Persebaya U-16 dipaksa menyerah dari PSM Makasar U-16. PSM Muda berhasil menang 1-0 dari Persebaya U-16. Hasil untuk Persebaya U-18 setelah pada laga sebelumnya kalah, pada laga kedua berhasil menahan imbang tuan rumah dengan skor 0 – 0. Hasil imbang kedua kembali harus diterima Persebaya U-20 dengan skor 2 – 2 pada laga terakhir di Kota Parepare.
Berikut klasemen lengkap Elite Pro Academy Liga 1 2023/2024 sampai laga ke-12 :
| GRUP A U20 | |||||||||
| Posisi | Klub | Main | Menang | Seri | Kalah | GF | GA | GD | Poin |
| 1 | PS BARITO PUTERA U20 | 12 | 5 | 6 | 1 | 17 | 12 | 5 | 21 |
| 2 | PERSIJA JAKARTA U20 | 12 | 6 | 2 | 4 | 24 | 15 | 9 | 20 |
| 3 | PSIS SEMARANG U20 | 12 | 5 | 4 | 3 | 17 | 11 | 6 | 19 |
| 4 | PERSITA TANGERANG U20 | 12 | 5 | 2 | 5 | 15 | 16 | -1 | 17 |
| 5 | DEWA UNITED FC U20 | 12 | 5 | 1 | 6 | 19 | 19 | 0 | 16 |
| 6 | PERSIKABO 1973 U20 | 12 | 2 | 1 | 9 | 12 | 31 | -19 | 7 |
| GRUP B | |||||||||
| Posisi | Klub | Main | Menang | Seri | Kalah | GF | GA | GD | Poin |
| 1 | PERSIS SOLO U20 | 12 | 8 | 2 | 2 | 21 | 11 | 10 | 26 |
| 2 | BORNEO FC SAMARINDA U20 | 12 | 7 | 3 | 2 | 21 | 13 | 8 | 24 |
| 3 | PSS SLEMAN U20 | 12 | 3 | 4 | 5 | 10 | 20 | -10 | 13 |
| 4 | AREMA FC U20 | 12 | 3 | 3 | 6 | 6 | 10 | -4 | 12 |
| 5 | RANS NUSANTARA FC U20 | 12 | 2 | 5 | 5 | 13 | 17 | -4 | 11 |
| 6 | PERSIB BANDUNG U20 | 12 | 2 | 5 | 5 | 18 | 18 | 0 | 11 |
| GRUP C U20 | |||||||||
| Posisi | Klub | Main | Menang | Seri | Kalah | GF | GA | GD | Poin |
| 1 | BHAYANGKARA PRESISI INDONESIA FC U20 | 12 | 9 | 3 | 0 | 24 | 10 | 14 | 30 |
| 2 | PERSEBAYA SURABAYA U20 | 12 | 4 | 5 | 3 | 18 | 14 | 4 | 17 |
| 3 | PSM MAKASSAR U20 | 12 | 4 | 3 | 5 | 19 | 20 | -1 | 15 |
| 4 | BALI UNITED FC U20 | 12 | 3 | 4 | 5 | 11 | 12 | -1 | 13 |
| 5 | MADURA UNITED FC U20 | 12 | 3 | 4 | 5 | 11 | 16 | -5 | 13 |
| 6 | PERSIK KEDIRI U20 | 12 | 1 | 5 | 6 | 7 | 18 | -11 | 8 |
| GRUP A U18 | |||||||||
| Posisi | Klub | Main | Menang | Seri | Kalah | GF | GA | GD | Poin |
| 1 | PERSIJA JAKARTA U18 | 12 | 7 | 3 | 2 | 19 | 8 | 11 | 24 |
| 2 | PSIS SEMARANG U18 | 12 | 6 | 4 | 2 | 17 | 9 | 8 | 22 |
| 3 | DEWA UNITED FC U18 | 12 | 4 | 5 | 3 | 9 | 8 | 1 | 17 |
| 4 | PERSITA TANGERANG U18 | 12 | 4 | 4 | 4 | 13 | 15 | -2 | 16 |
| 5 | PS BARITO PUTERA U18 | 12 | 3 | 4 | 5 | 15 | 22 | -7 | 13 |
| 6 | PERSIKABO 1973 U18 | 12 | 0 | 4 | 8 | 13 | 24 | -11 | 4 |
| GRUP B | |||||||||
| Posisi | Klub | Main | Menang | Seri | Kalah | GF | GA | GD | Poin |
| 1 | PERSIB BANDUNG U18 | 12 | 8 | 2 | 2 | 19 | 5 | 14 | 26 |
| 2 | BORNEO FC SAMARINDA U18 | 12 | 6 | 4 | 2 | 18 | 8 | 10 | 22 |
| 3 | PERSIS SOLO U18 | 12 | 6 | 3 | 3 | 22 | 7 | 15 | 21 |
| 4 | PSS SLEMAN U18 | 12 | 6 | 2 | 4 | 14 | 11 | 3 | 20 |
| 5 | RANS NUSANTARA FOOTBALL CLUB U18 | 12 | 2 | 2 | 8 | 6 | 30 | -24 | 8 |
| 6 | AREMA FC U18 | 12 | 0 | 3 | 9 | 3 | 21 | -18 | 3 |
| GRUP C U18 | |||||||||
| Posisi | Klub | Main | Menang | Seri | Kalah | GF | GA | GD | Poin |
| 1 | BALI UNITED FC U18 | 12 | 9 | 1 | 2 | 35 | 8 | 27 | 28 |
| 2 | BHAYANGKARA PRESISI INDONESIA FC U18 | 12 | 8 | 1 | 3 | 27 | 17 | 10 | 25 |
| 3 | PSM MAKASSAR U18 | 12 | 6 | 3 | 3 | 12 | 10 | 2 | 21 |
| 4 | PERSEBAYA U18 | 12 | 5 | 3 | 4 | 15 | 11 | 4 | 18 |
| 5 | PERSIK KEDIRI U18 | 12 | 1 | 3 | 8 | 5 | 24 | -19 | 6 |
| 6 | MADURA UNITED FC U18 | 12 | 1 | 1 | 10 | 9 | 33 | -24 | 4 |
| GRUP A U16 | |||||||||
| Posisi | Klub | Main | Menang | Seri | Kalah | GF | GA | GD | Poin |
| 1 | PERSIJA JAKARTA U16 | 12 | 6 | 4 | 2 | 20 | 9 | 11 | 22 |
| 2 | BARITO PUTERA U16 | 12 | 4 | 7 | 1 | 11 | 6 | 5 | 19 |
| 3 | DEWA UNITED FC U16 | 12 | 4 | 5 | 3 | 10 | 12 | -2 | 17 |
| 4 | PSIS SEMARANG U16 | 12 | 4 | 3 | 5 | 11 | 12 | -1 | 15 |
| 5 | PERSITA TANGERANG U16 | 12 | 2 | 8 | 2 | 13 | 11 | 2 | 14 |
| 6 | PERSIKABO 1973 U16 | 12 | 1 | 3 | 8 | 7 | 22 | -15 | 6 |
| GRUP B | |||||||||
| Posisi | Klub | Main | Menang | Seri | Kalah | GF | GA | GD | Poin |
| 1 | BORNEO FC SAMARINDA | 12 | 10 | 2 | 0 | 24 | 7 | 17 | 32 |
| 2 | PERSIS SOLO U16 | 12 | 9 | 2 | 1 | 29 | 6 | 23 | 29 |
| 3 | PERSIB BANDUNG U16 | 12 | 6 | 4 | 2 | 18 | 6 | 12 | 22 |
| 4 | PSS SLEMAN U16 | 12 | 4 | 2 | 6 | 9 | 13 | -4 | 14 |
| 5 | AREMA FC U16 | 12 | 2 | 0 | 10 | 3 | 17 | -14 | 6 |
| 6 | RANS NUSANTARA FOOTBALL CLUB U16 | 12 | 0 | 0 | 12 | 5 | 39 | -34 | 0 |
| GRUP C U16 | |||||||||
| Posisi | Klub | Main | Menang | Seri | Kalah | GF | GA | GD | Poin |
| 1 | PERSEBAYA U16 | 12 | 8 | 2 | 2 | 19 | 12 | 7 | 26 |
| 2 | BALI UNITED FC U16 | 12 | 7 | 3 | 2 | 20 | 10 | 10 | 24 |
| 3 | BHAYANGKARA PRESISI INDONESIA FC U16 | 12 | 6 | 2 | 4 | 21 | 10 | 11 | 20 |
| 4 | PSM MAKASSAR U16 | 12 | 5 | 2 | 5 | 17 | 10 | 7 | 17 |
| 5 | MADURA UNITED FC U16 | 12 | 2 | 4 | 6 | 9 | 18 | -9 | 10 |
| 6 | PERSIK KEDIRI U16 | 12 | 0 | 3 | 9 | 2 | 28 | -26 | 3 |
